Healthy Chocolate Banana Muffins (Fresh Milled Flour)

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Rich and chocolatey, these healthy banana chocolate muffins are packed with wholesome ingredients! Freshly milled flour provides nutrients, while maple syrup and ripened bananas add the perfect amount of sweetness. Enjoy the rich chocolate flavor and moistness of chocolate cake, but with none of the guilt. Yum!

Wholesome cooking is all about balance—using simple ingredients to create meals that taste amazing and truly support your well-being. I’m passionate about making that process easy and fun, and I’d love for you to join me over on Instagram where I share new recipes and inspiration every week.

Oh and by the way, I’m so glad you’re here!

Close-up of three chocolate muffins in beige paper liners on a scalloped white plate, with a checked cloth beside them.

I am not lying when I say I was scrambling to get a picture of these muffins because my family (myself included I’ll admit) was absolutely devouring them! *Here’s a quick note to myself to double the recipe next time.*

I decided to call these muffins “healthy banana muffins” because they contain really wholesome ingredients. No refined sugar, fresh milled flour, avocado oil, bananas… there’s really nothing in these muffins that I feel bad about feeding my family with. And bonus? They are seriously delicious!

Let’s make them!

Quick Recipe Snapshot

TOTAL TIME: Around 30 minutes.
YIELD: 12 delicious muffins 🙂
STORAGE & FREEZING: Leftovers store well in an airtight container for up to 3-4 days. Baked muffins also freeze well for up to 3 months.
BEST SERVED: Fresh from the oven with a pat (or two!) of butter.

Why You’ll Love This Recipe


  • RICH CHOCOLATE FLAVOR: That’s all you need to know! The addition of cocoa powder and chocolate chips make for a super rich and fudgy chocolate muffin.
  • PACKED FULL OF NUTRIENTS: Probably my favorite thing about these muffins (other than the taste) is that they are packed full of nutrients thanks to freshly milled flour and other wholesome ingredients. A treat you can feel good about!
  • QUICK & EASY: Just like sourdough banana muffins and sourdough chocolate chip muffins, these muffins can be whipped up quickly for a quick breakfast or snack option.

Ingredients You’ll Need

This is a quick overview of some essential ingredients needed for this recipe. Be sure to check out the recipe card below for the full list!

  • Fresh Milled Flour: I used soft white wheat berries in this recipe. Hard white wheat will also work.
  • Oil: Make sure to use a neutral flavored oil. My personal favorite to use is avocado oil. Melted coconut oil would also work well!
  • Cocoa Powder: Regular unsweetened cocoa powder or Dutch process cocoa powder works great.
  • Bananas: The riper the better! Think brown and spotted, like you would use for banana bread.
  • Maple Syrup: Adds sweetness. Honey or brown sugar are both great swaps.
a labeled ingredient shot of ingredients needed to make chocolate banana muffins with fresh milled flour

Tips for Making This Recipe

  1. Wheat Berries: I used soft white wheat berries milled on the highest setting in this recipe to yield get the lightest, fluffiest texture possible.
  2. Baking: Baking the muffins at a high temperature initially and then lowering the temperature halfway through baking ensures tall, bakery-style muffin tops. I use the same method in this recipe for sourdough chocolate chip muffins.
  3. Mix by Hand: In most of my other recipes, I use a stand mixer to mix up any kind of dough or batter, but for these muffins, I highly recommend mixing them by hand until just combined. It will yield a lighter, fluffier muffin!

Be sure to check out the full recipe and ingredient list below!

Step by Step Instructions

  1. Preheat oven to 425 degrees F. Prepare a 12 count muffin pan by lining it with paper liners or liberally spraying with a non-stick spray (I use avocado oil) and set aside.
  2. Mill Flour: Using a grain mill, mill wheat berries on a fine setting. You will need 1 1/2 cups of flour total. Set aside while you prepare the other ingredients.
  3. In a medium bowl, mash the bananas up using a fork. Once mashed, whisk in the maple syrup, egg, avocado oil, and vanilla extract until combined. Set aside.
  4. Begin adding the dry ingredients to the wet ingredients, whisking it all together until combined. Fold in the chocolate chips.
  5. Using a medium sized cookie scoop or 1/4 cup measuring cup, portion the batter into prepared muffin pan, filling each liner all the way to the top.
  6. Bake the muffins for 5 minutes at 425°F, and then reduce the oven temperature to 350°F and continue baking for another 15 minutes (do not open the oven door or remove the muffins, just leave them in and reduce the temperature). A toothpick inserted in the center should come out clean or with few moist crumbs (no wet batter) to test doneness.
  7. Allow the muffins to cool in the pan for a few minutes before transferring to a wire cooling rack to cool completely (you can also enjoy them warm). Top with a hearty slab of butter and enjoy!

Recipe FAQs & Storage

What is the difference between freshly milled flour and regular flour?

Commercial mills remove part of the wheat kernel, removing the most nutritious part of the grain to make white flour. Milling your own flour not only ensures that your flour is as nutritious as it can be, but also has a wonderful taste!

How long does freshly milled flour last?

Fresh milled flour is best used immediately to gain the full nutritional benefits.

What makes a muffin moist and fluffy?

I find that not overmixing the batter really helps to keep a light, fluffy texture. Also using room temperature ingredients- it really does make a difference!

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Close-up of three chocolate muffins in beige paper liners on a scalloped white plate, with a checked cloth beside them.

Healthy Chocolate Banana Muffins (Fresh Milled Flour)


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  • Total Time: 35 minutes

Description

Rich and chocolatey, these healthy banana chocolate muffins are packed with wholesome ingredients! Freshly milled flour provides nutrients, while maple syrup and ripened bananas add the perfect amount of sweetness. Enjoy the rich chocolate flavor and moistness of chocolate cake, but with none of the guilt. Yum!


Ingredients

Scale
  • 23 mashed ripe bananas
  • 1/2 cup maple syrup
  • 1 egg
  • 1/4 cup avocado oil (can substitute coconut oil or melted butter)
  • 1 tsp pure vanilla extract
  • 1 1/2 cups fresh milled flour (soft white wheat)
  • 1/2 cup Dutch process cocoa powder (or unsweetened cocoa powder)
  • 1 tsp baking powder
  • 1 tsp baking soda
  • 1/2 tsp salt
  • 1 cup semi sweet chocolate chips


Instructions

  1. Preheat oven to 425 degrees F. Prepare a 12 count muffin pan by lining it with paper liners or liberally spraying with a non-stick spray (I use avocado oil) and set aside.
  2. Mill Flour: Using a grain mill, mill wheat berries on a fine setting. You will need 1 1/2 cups of flour total. Set aside while you prepare the other ingredients.
  3. In a medium bowl, mash the bananas up using a fork. Once mashed, whisk in the maple syrup, egg, avocado oil, and vanilla extract until combined. Set aside.
  4. Begin adding the dry ingredients to the wet ingredients, whisking it all together until combined. Fold in the chocolate chips.
  5. Using a medium sized cookie scoop or 1/4 cup measuring cup, portion the batter into prepared muffin pan, filling each liner all the way to the top.
  6. Bake the muffins for 5 minutes at 425°F, and then reduce the oven temperature to 350°F and continue baking for another 15 minutes (do not open the oven door or remove the muffins, just leave them in and reduce the temperature). A toothpick inserted in the center should come out clean or with few moist crumbs (no wet batter) to test doneness.
  7. Allow the muffins to cool in the pan for a few minutes before transferring to a wire cooling rack to cool completely (you can also enjoy them warm). Top with a hearty slab of butter and enjoy!

Notes

  • Wheat Berries: I used soft white wheat berries milled on the highest setting in this recipe to yield get the lightest, fluffiest texture possible.
  • Mix by Hand: In most of my other recipes, I use a stand mixer to mix up any kind of dough or batter, but for these muffins, I highly recommend mixing them by hand until just combined. It will yield a lighter, fluffier muffin!
  • Baking: Baking the muffins at a high temperature initially and then lowering the temperature halfway through baking ensures tall, bakery-style muffin tops. I use the same method in this recipe for sourdough chocolate chip muffins.
  • Storage: These muffins will store well in an airtight container at room temperature for up to 3-4 days. I recommend eating them fresh for the best (and most delicious!) results.
  • Freezing Instructions: Baked muffins will store well in an airtight, freezer-safe container in the freezer for up to 3 months. Thaw them in the refrigerator or on the counter at room temperature before serving.
  • Prep Time: 15 minutes
  • Cook Time: 20 minutes
  • Category: Breakfast Recipes
  • Cuisine: American

If you loved this recipe for healthy chocolate banana muffins, be sure to come back and leave a comment and a 5 star rating! Tag me on Instagram with your creations @ourhandcraftedhomeblog.

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